Provided by: libbio-perl-run-perl_1.6.9-1_all bug

NAME

       Bio::DB::SoapEUtilities::GQueryAdaptor - Handle for Entrez SOAP GlobalQuery items

SYNOPSIS

        my $fac = Bio::DB::SoapEUtilities->new();
        # run a query, returning a GQueryAdaptor
        my $queries = $fac->egquery( -term => 'BRCA and human' )->run(-auto_adapt=>1);
        # all databases with hits
        my @dbs = $queries->found_in_dbs;
        # queries by database
        my $prot_count = $queries->query_by_db('prot')->count;
        # iterate over gquery
        while ( my $q = $queries->next_query ) {
           my $db = $q->db;
           my $count = $q->count;
           my $status = $q->status;
        }

DESCRIPTION

       This adaptor provides an iterator ("next_query()") and other convenience functions for
       parsing NCBI Entrez EUtility "egquery" SOAP results.

SEE ALSO

       Bio::DB::SoapEUtilities

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
       http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         http://redmine.open-bio.org/projects/bioperl/

AUTHOR - Mark A. Jensen

       Email maj -at- fortinbras -dot- us

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   new
        Title   : new
        Usage   : my $obj = new Bio::DB::SoapEUtilities::GQueryAdaptor();
        Function: Builds a new Bio::DB::SoapEUtilities::GQueryAdaptor object
        Returns : an instance of Bio::DB::SoapEUtilities::GQueryAdaptor
        Args    :

   next_query()
        Title   : next_query
        Usage   :
        Function: return the next global query from the attached Result
        Returns :
        Args    :

   found_in_dbs()
        Title   : found_in_dbs
        Usage   :
        Function: Return list of db names containing hits for
                  the query term
        Returns : array of scalar strings
        Args    : none

   query_by_db()
        Title   : query_by_db
        Usage   :
        Function: get gquery object by db name
        Returns :
        Args    : db name (scalar string)