Provided by: libbio-perl-perl_1.6.901-2_all bug

NAME

       Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences
       in factories which create sequences (like SeqIO)

SYNOPSIS

       # do not use this object directly it is an interface # get a
       Bio::Factory::SequenceFactoryI object like

           use Bio::Seq::SeqFactory;
           my $seqbuilder = Bio::Seq::SeqFactory->new('-type' => 'Bio::PrimarySeq');

           my $seq = $seqbuilder->create(-seq => 'ACTGAT',
                                         -display_id => 'exampleseq');

           print "seq is a ", ref($seq), "\n";

DESCRIPTION

       A generic way to build Sequence objects via a pluggable factory.  This reduces the amount
       of code that looks like

         if( $type  eq 'Bio::PrimarySeq' ) { ... }
         elsif( $type eq 'Bio::Seq::RichSeq' ) { ... }

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich

       Email jason-at-bioperl.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   create
        Title   : create
        Usage   : my $seq = $seqbuilder->create(-seq => 'CAGT',
                                                -id => 'name');
        Function: Instantiates new Bio::PrimarySeqI (or one of its child classes)
                  This object allows us to genericize the instantiation of sequence
                  objects.
        Returns : Bio::PrimarySeqI
        Args    : initialization parameters specific to the type of sequence
                  object we want.  Typically
                  -seq        => $str,
                  -display_id => $name