Provided by: libbio-perl-perl_1.6.901-2_all bug

NAME

       Bio::Factory::TreeFactoryI - Factory Interface for getting and writing trees
         from/to a data stream

SYNOPSIS

         # get a $factory from somewhere Bio::TreeIO likely
         my $treeio = Bio::TreeIO->new(-format => 'newick', #this is phylip/newick format
                                      -file   => 'file.tre');
         my $treeout = Bio::TreeIO->new(-format => 'nexus',
                                       -file   => ">file.nexus");

         # convert tree formats from newick/phylip to nexus
         while(my $tree = $treeio->next_tree) {
             $treeout->write_tree($tree);
         }

DESCRIPTION

       This interface describes the minimal functions needed to get and write trees from a data
       stream.  It is implemented by the Bio::TreeIO factory.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich

       Email jason@bioperl.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   next_tree
        Title   : next_tree
        Usage   : my $tree = $factory->next_tree;
        Function: Get a tree from the factory
        Returns : L<Bio::Tree::TreeI>
        Args    : none

   write_tree
        Title   : write_tree
        Usage   : $treeio->write_tree($tree);
        Function: Writes a tree onto the stream
        Returns : none
        Args    : L<Bio::Tree::TreeI>