Provided by: libbio-perl-run-perl_1.6.9-1_all bug

NAME

       Bio::Tools::Run::AnalysisFactory::soap - A SOAP-based access to the list of analysis tools

SYNOPSIS

       Do not use this object directly, it is recommended to access it and use it through the
       Bio::Tools::Run::AnalysisFactory module:

         use Bio::Tools::Run::AnalysisFactory;
         my $list = Bio::Tools::Run::AnalysisFactory->new(-access => 'soap')
            ->available_analyses;
         print join ("\n", @$list) . "\n";

DESCRIPTION

       All public methods are documented in the interface module "Bio::Factory::AnalysisI".

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         http://redmine.open-bio.org/projects/bioperl/

AUTHOR

       Martin Senger (martin.senger@gmail.com)

COPYRIGHT

       Copyright (c) 2003, Martin Senger and EMBL-EBI.  All Rights Reserved.

       This module is free software; you can redistribute it and/or modify it under the same
       terms as Perl itself.

DISCLAIMER

       This software is provided "as is" without warranty of any kind.

SEE ALSO

       ยท   http://www.ebi.ac.uk/soaplab/Perl_Client.html

BUGS AND LIMITATIONS

       None known at the time of writing this.

APPENDIX

       The main documentation details are in "Bio::Factory::AnalysisI".

   _initialize
        Usage   : my $factory = Bio::Tools::Run::AnalysisFactory->new(@args);
                  (_initialize is internally called from the 'new()' method)
        Returns : nothing interesting
        Args    : This module recognises and uses following arguments:
                    -location
                    -httpproxy
                    -soap
                  Additionally, the main module Bio::Tools::Run::AnalysisFactory
                  recognises also:
                    -access

       It populates calling object with the given arguments, and then - for some attributes and
       only if they are not yet populated - it assigns some default values.

       This is an actual new() method (except for the real object creation and its blessing which
       is done in the parent class Bio::Root::Root in method _create_object).

       Note that this method is called always as an object method (never as a class method) - and
       that the object who calls this method may already be partly initiated (from
       Bio::Tools::Run::AnalysisFactory::new method); so if you need to do some tricks with the
       'class invocation' you need to change Bio::Tools::Run::AnalysisFactory new method, not
       this one.

       -location
           A URL (also called an endpoint) defining where is located a Web Service functioning
           for this object.

           Default is "http://www.ebi.ac.uk/soaplab/services" (a service running at European
           Bioinformatics Institute on top of most of the EMBOSS analyses, and on top of few
           others).

           For example, if you run your own Web Service using Java(TM) Apache Axis toolkit, the
           location might be something like "http://localhost:8080/axis/services".

       -httpproxy
           In addition to the location parameter, you may need to specify also a location/URL of
           an HTTP proxy server (if your site requires one). The expected format is
           "http://server:port".  There is no default value.

       -soap
           Defines your own SOAP::Lite object. Useful if you need finer-grained access to many
           features and attributes of the wonderful Paul Kulchenko's module.

   VERSION and Revision
        Usage   : print $Bio::Tools::Run::AnalysisFactory::soap::VERSION;
                  print $Bio::Tools::Run::AnalysisFactory::soap::Revision;