Provided by: libbio-perl-perl_1.6.901-2_all bug


       Bio::TreeIO::cluster - A TreeIO driver module for parsing
       Algorithm::Cluster::treecluster() output


         # do not use this module directly
         use Bio::TreeIO;
         use Algorithm::Cluster;
         my ($result, $linkdist) = Algorithm::Cluster::treecluster(
           distances => $matrix
         my $treeio = Bio::TreeIO->new(
           -format   => 'cluster',
           -result   =>  $result,
           -linkdist =>  $linkdist,
           -labels   =>  $labels
         my $tree = $treeio->next_tree;


       This is a driver module for parsing Algorithm::Cluster::treecluster() output.


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AUTHOR - Guillaume Rousse

       Email Guillaume-dot-Rousse-at-inria-dot-fr


       Jason Stajich - jason-at-bioperl-dot-org


       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

        Title   : new
        Usage   : my $obj = Bio::TreeIO::cluster->new();
        Function: Builds a new Bio::TreeIO::cluster object for reading Algorithm::Cluster::treecluster output
        Returns : Bio::TreeIO::cluster
        Args    :-result   => Algorithm::Cluster result
                 -linkdist => distance between links
                 -labels   => node labels

        Title   : next_tree
        Usage   : my $tree = $treeio->next_tree
        Function: Gets the next tree in the stream
        Returns : Bio::Tree::TreeI
        Args    : none

        Title   : write_tree
        Usage   :
        Function: Sorry not possible with this format
        Returns : none
        Args    : none