Provided by: libbio-perl-perl_1.6.901-2_all bug

NAME

       Bio::TreeIO::cluster - A TreeIO driver module for parsing
       Algorithm::Cluster::treecluster() output

SYNOPSIS

         # do not use this module directly
         use Bio::TreeIO;
         use Algorithm::Cluster;
         my ($result, $linkdist) = Algorithm::Cluster::treecluster(
           distances => $matrix
         );
         my $treeio = Bio::TreeIO->new(
           -format   => 'cluster',
           -result   =>  $result,
           -linkdist =>  $linkdist,
           -labels   =>  $labels
         );
         my $tree = $treeio->next_tree;

DESCRIPTION

       This is a driver module for parsing Algorithm::Cluster::treecluster() output.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Guillaume Rousse

       Email Guillaume-dot-Rousse-at-inria-dot-fr

CONTRIBUTORS

       Jason Stajich - jason-at-bioperl-dot-org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   new
        Title   : new
        Usage   : my $obj = Bio::TreeIO::cluster->new();
        Function: Builds a new Bio::TreeIO::cluster object for reading Algorithm::Cluster::treecluster output
        Returns : Bio::TreeIO::cluster
        Args    :-result   => Algorithm::Cluster result
                 -linkdist => distance between links
                 -labels   => node labels

   next_tree
        Title   : next_tree
        Usage   : my $tree = $treeio->next_tree
        Function: Gets the next tree in the stream
        Returns : Bio::Tree::TreeI
        Args    : none

   write_tree
        Title   : write_tree
        Usage   :
        Function: Sorry not possible with this format
        Returns : none
        Args    : none