NAME

       WarpTensorImageMultiTransform - part of ANTS registration suite

DESCRIPTION

       WarpImageMultiTransform  ImageDimension  moving_image  output_image  [-R reference_image |
       --tightest-bounding-box]   (--reslice-by-header)   [--use-NN   (use    Nearest    Neighbor
       Interpolator)][--ANTS-prefix     prefix-name     |    --ANTS-prefix-invert    prefix-name]
       {[deformation_field | [-i] affine_transform_txt | --Id | [-i] --moving-image-header /  -mh
       |    [-i]    --reference-image-header    /    -rh]}    Example:    Reslice    the   image:
       WarpImageMultiTransform 3 Imov.nii  Iout.nii  --tightest-bounding-box  --reslice-by-header
       Reslice  the  image  to  a reference image: WarpImageMultiTransform 3 Imov.nii Iout.nii -R
       Iref.nii --tightest-bounding-box --reslice-by-header Note: -i will use  the  inversion  of
       the   following  affine  transform.   --tightest-bounding-box  will  be  overrided  by  -R
       reference_image if given. It computes the tightest  bounding  box  using  all  the  affine
       transformations.  --Id uses the identity transform.  --moving-image-header or -mh in short
       will use the orientation header of the moving image file. This is typically not used  with
       --reslice-by-header.   --reference-image-header  or  -rh in short will use the orientation
       header of the fixed image file. This  is  typically  not  used  with  --reslice-by-header.
       --reslice-by-header  uses  the  orientation  matrix  and  origin encoded in the image file
       header. It can be used together with -R. This is typically  not  used  together  with  any
       other  transforms.  --reslice-by-header  is  equvalient  to  -i -mh, or -fh -i -mh if used
       together with -R.

       For ANTS users: To use with the deformation field and the affine transform files generated
       from   ANTS:   --ANTS-prefix   prefix-name  --ANTS-prefix-invert  prefix-name  Example:  3
       moving_image   output_image   -R   reference_image   --ANTS-prefix   abcd.nii.gz   Applies
       abcdWarpxvec.nii.gz/abcdWarpyvec.nii.gz/abcdWarpzvec.nii.gz  and  then abcdAffine.txt. Use
       this with ANTS to  get  the  moving_image  warped  into  the  reference_image  domain.   3
       reference_image    output_image    -R    moving_image   --ANTS-prefix-invert   abcd.nii.gz
       --ANTS-invert     Applies     the     inversion     of     abcdAffine.txt     and     then
       abcdInverseWarpxvec.nii.gz/abcdInverseWarpyvec.nii.gz/abcdInverseWarpzvec.nii.gz. Use this
       with ANTS to get the reference_image warped into the moving_image  domain.   Note:  prefix
       name "abcd" without any extension will use ".nii.gz" by default