NAME

       bowtie-inspect - extracts information from a bowtie index

SYNOPSIS

       bowtie-inspect [options]* <ebwt_base>

DESCRIPTION

       <ebwt_base>
              ebwt filename minus trailing .1.ebwt/.2.ebwt

              By  default,  prints  FASTA records of the indexed nucleotide sequences to standard
              out.  With -n, just prints names.  With -s, just prints  a  summary  of  the  index
              parameters and sequences.  With -e, preserves colors if applicable.

OPTIONS

       -a/--across <int>
              Number of characters across in FASTA output (default: 60)

       -n/--names
              Print reference sequence names only

       -s/--summary
              Print summary incl. ref names, lengths, index properties

       -e/--ebwt-ref
              Reconstruct reference from ebwt (slow, preserves colors)

       -v/--verbose
              Verbose output (for debugging)

       -h/--help
              print detailed description of tool and its options

       --help print this usage message

       64-bit  Built  on  batsu  Thu May 30 11:17:56 UTC 2013 Compiler: gcc version 4.8.0 (Ubuntu
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       -Wl,-Bsymbolic-functions -Wl,-z,relro Sizeof {int, long, long long, void*, size_t, off_t}:
       {4, 8, 8, 8, 8, 8}