Provided by: cmtk_3.0.0-1ubuntu1_amd64
make_initial_affine - Initialize affine transformation
make_initial_affine ReferenceImage FloatingImage OutputXform
Compute initial affine transformation by aligning centers of mass or principal axes
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --xml Write command line syntax specification in XML markup (for Slicer integration). --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Transformation construction control --mode Mode selection for initialization Supported values: "direction-vectors", "centers-of- mass", "principal-axes", "identity", where the default is "direction-vectors", or use one of the following: --direction-vectors Alignment based on image direction vectors [This is the default] --centers-of-mass Alignment based on centers of mass (translation only) --principal-axes Alignment based on principal axes --identity Create only an identity transformation --center-xform, -C Set transformation center (for rotation, scale) to center of reference image. --native-space Write transformation between the native image spaces, rather than in CMTK standard RAS space. This is the default when running this tool as a Slicer plugin. Image/Transformation Database --db <string> Path to image/transformation database that should be updated with the newly transformation from reference to floating image. [Default: NONE]
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.