Provided by: cmtk_3.0.0-1ubuntu1_amd64 bug


       reorient - Reorientation


       reorient [options] new-orientation infile outfile


       Convert between image orientations, i.e., physically re-order pixel array and adapt stored
       anatomical orientation information


   Global Toolkit Options (these are shared by all CMTK tools)
            Write list of basic command line options to standard output.

            Write complete list of basic and advanced command line options to standard output.

            Write list of command line options to standard output in MediaWiki markup.

            Write man page source in 'nroff' markup to standard output.

            Write toolkit version to standard output.

            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --input-orientation <string>, -i <string>
            Override input orientation. This is a three-letter code,  e.g.,  'RAS',  'LPI',  etc.
            [Default: NONE]

       --output-orientation <string>, -o <string>
            Override  output orientation. Default is 'RAS', or the closest match supported by the
            output image file format [Default: NONE]

       --output-space <string>
            Override output coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This  does  not  affect
            the array order. Default is to write image in the input image space.  [Default: NONE]


       Torsten  Rohlfing,  with  contributions  from  Michael  P. Hasak, Greg Jefferis, Calvin R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko



       Report bugs at


       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol  and  Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From
       April 2009 through September 2011, CMTK development and maintenance was supported  by  the
       NIBIB under Grant EB008381.