Provided by: emboss_6.6.0-1_amd64
complex - Find the linguistic complexity in nucleotide sequences
complex -sequence seqall -lwin integer -step integer -jmin integer -jmax integer -omnia toggle -sim integer -freq boolean -print boolean -outfile outfile -ujtablefile outfile -outseq seqoutall complex -help
complex is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Composition" command group(s).
Input section -sequence seqall -lwin integer Default value: 100 -step integer Displacement of the window over the sequence Default value: 5 -jmin integer Default value: 4 -jmax integer Default value: 6 Advanced section -omnia toggle Calculate over a set of sequences Default value: N -sim integer Calculate the linguistic complexity by comparison with a number of simulations having a uniform distribution of bases -freq boolean Execute the simulation of a sequence based on the base frequency of the original sequence Default value: N Output section -print boolean Generate a file named UjTable containing the values of Uj for each word j in the real sequence(s) and in any simulated sequences Default value: N -outfile outfile -ujtablefile outfile Default value: complex.ujtable -outseq seqoutall
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
complex is fully documented via the tfm(1) system.
Debian Med Packaging Team <email@example.com> Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.