NAME

       fastq_quality_filter - Filters sequences based on quality

DESCRIPTION

       usage:  fastq_quality_filter [-h] [-v] [-q N] [-p N] [-z] [-i INFILE] [-o OUTFILE] Part of
       FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)

       [-h]   = This helpful help screen.

       [-q N] = Minimum quality score to keep.

       [-p N] = Minimum percent of bases that must have [-q] quality.

       [-z]   = Compress output with GZIP.

       [-i INFILE]
              = FASTA/Q input file. default is STDIN.

              [-o OUTFILE] = FASTA/Q output file. default is STDOUT.  [-v]          =  Verbose  -
              report number of sequences.

       If [-o] is specified,
              report will be printed to STDOUT.

              If  [-o]  is  not  specified (and output goes to STDOUT), report will be printed to
              STDERR.

SEE ALSO

       The quality of  this  automatically  generated  manpage  might  be  insufficient.   It  is
       suggested to visit

              http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

       to get a better layout as well as an overview about connected FASTX tools.