Provided by: genometools_1.5.1-2ubuntu1_amd64 bug


       gt-chseqids - Change sequence ids by the mapping given in mapping_file.


       gt chseqids [option ...] mapping_file [GFF3_file]


           sort the GFF3 features after changing the sequence ids (memory consumption is
           proportional to the input file size) (default: no)

           be verbose (default: no)

           redirect output to specified file (default: undefined)

           write gzip compressed output file (default: no)

           write bzip2 compressed output file (default: no)

           force writing to output file (default: no)

           display help and exit

           display version information and exit


       File format for mapping_file:

       The supplied mapping file defines a mapping table named “chseqids”. It maps the
       sequence-regions given in the GFF3_file to other names. It can be defined as follows:

       chseqids = { chr1 = "seq1", chr2 = "seq2" }

       When this example is used, all sequence ids “chr1” will be changed to “seq1' ' and all
       sequence ids ``chr2” to “seq2”.


       Report bugs to <>.

                                            10/07/2012                             GT-CHSEQIDS(1)