NAME

       gt-ltrclustering - Cluster features of LTRs.

SYNOPSIS

       gt ltrclustering [option ...] indexname [GFF3_file ...]

OPTIONS

       -psmall
           specify how many percent of the smaller sequence a match needs to cover in order to
           cluster the two sequences of the match. (default: 0)

       -plarge
           specify how many percent of the larger sequence a match needs to cover in order to
           cluster the two sequences of the match. (default: 0)

       -o
           redirect output to specified file (default: undefined)

       -gzip
           write gzip compressed output file (default: no)

       -bzip2
           write bzip2 compressed output file (default: no)

       -force
           force writing to output file (default: no)

       -help
           display help and exit

       -version
           display version information and exit

AUTHOR

       Report bugs to <gt-users@genometools.org>.

                                            10/07/2012                        GT-LTRCLUSTERING(1)