Provided by: genometools_1.5.1-2ubuntu1_amd64 bug


       gt-mgth - Metagenomethreader, for predicting genes in metagenomeprojects.


       gt mgth [option ...] XML-File Query-FASTA-File Hit-FASTA-File


           score for synonymic base exchanges (default: 1.00)

           score for non-synonymic base exchanges (default: -1.00)

           score for blast-hit-end within query sequence (default: -10.00)

           score for stop-codon within querysequence (default: -2.00)

           score for stop-codon within hitsequence (default: -5.00)

           score for leaving a gene on forward/reverse strand or enter a gene on forward/reverse
           strand (default: -2.00)

           max. span between coding-regions resume as one prediction (default: 400.00)

           max. span between coding-regions in different reading frames resume as coding-regions
           in the optimal reading-frame (default: 200.00)

           db-name for fcgi-db (default: nucleotide)

           name for resulting output-file (default: output)

           name for the Hit-Sequence-DB (default: nucleotide database)

           true or false if a Hit-FASTA-File exist (default: no)

           format of the output-file (default: 1)

           minimum length of the as-sequence (default: 15)

           minimum percent-value for hit-statistic-output (default: 0.00)

           use of alternative start-codons (default: 1)

           search for homology (default: no)

           testmodus, output without creating date (default: no)

           extend the EGTs to max (default: no)

           display help and exit

           display version information and exit


       For detailed information, please refer to the manual of mgth.


       Report bugs to <>.

                                            10/07/2012                                 GT-MGTH(1)