NAME

       gt-orffinder - Identifies ORFs (open reading frames) in sequences.

SYNOPSIS

       gt orffinder [option ...] indexname [GFF3_file ...]

OPTIONS

       -types
           Specify regions which should be searched for open reading frames, e.g.
           LTR_retrotransposon

       -allorfs
           search for all ORFs instead of only the longest (default: no)

       -min
           minimum length of ORF (default: 30)

       -max
           maximum length of ORF (default: 10000)

       -v
           be verbose (default: no)

       -o
           redirect output to specified file (default: undefined)

       -gzip
           write gzip compressed output file (default: no)

       -bzip2
           write bzip2 compressed output file (default: no)

       -force
           force writing to output file (default: no)

       -help
           display help and exit

       -version
           display version information and exit

AUTHOR

       Report bugs to <gt-users@genometools.org>.

                                            10/07/2012                            GT-ORFFINDER(1)