Provided by: biosquid_1.9g+cvs20050121-3_amd64
seqsplit - split seqs into chunks of defined size and overlap
seqsplit [-options] <seqfile>
This manual page documents briefly the seqsplit command. seqsplit is a program that splits sequences into smaller chunks of defined size and overlap; output a FASTA file.
-h Help; display usage and version. -o <file> Output the new FASTA file to <file>. --fragfile <f> Save one-line-per-frag coord summary file to <f>. --informat <s> Specify sequence file format <s>. --length <n> Set max length of each unique seq frag to <n>. --overlap <n> Set overlap length to <n> (total frag size = length+overlap). --shortnames Use short "frag1" names, not "<src>/<from>-<to>".
Still working in 32 bits -- no sequence can be more than 2 GB in size.
afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1), weight(1).
Sean Eddy HHMI/Department of Genetics Washington University School of Medicine 4444 Forest Park Blvd., Box 8510 St Louis, MO 63108 USA Phone: 1-314-362-7666 FAX : 1-314-362-2157 Email: firstname.lastname@example.org This manual page was written by Nelson A. de Oliveira <email@example.com>, for the Debian project (but may be used by others). Mon, 01 Aug 2005 15:28:08 -0300 SEQSPLIT(1)