Provided by: emboss_6.6.0-1_amd64
stretcher - Needleman-Wunsch rapid global alignment of two sequences
stretcher -asequence sequence -bsequence sequence [-datafile matrix] [-gapopen integer] [-gapextend integer] -outfile align stretcher -help
stretcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Global" command group(s).
Input section -asequence sequence -bsequence sequence -datafile matrix This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation. Additional section -gapopen integer Default value: @($(acdprotein)? 12 : 16) -gapextend integer Default value: @($(acdprotein)? 2 : 4) Output section -outfile align
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
stretcher is fully documented via the tfm(1) system.
Debian Med Packaging Team <email@example.com> Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.