Provided by: emboss_6.6.0-1_amd64
supermatcher - Calculate approximate local pair-wise alignments of larger sequences
supermatcher -asequence seqall -bsequence seqset [-datafile matrixf] [-minscore float] -gapopen float -gapextend float [-width integer] [-wordlen integer] -outfile align [-errorfile outfile] supermatcher -help
supermatcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Local" command group(s).
Input section -asequence seqall -bsequence seqset -datafile matrixf This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation. -minscore float Minimum alignment score to report an alignment. Required section -gapopen float Default value: @($(acdprotein)? 10.0 : 10.0) -gapextend float Default value: @($(acdprotein)? 0.5 : 0.5) Additional section -width integer Default value: 16 -wordlen integer Default value: 6 Output section -outfile align -errorfile outfile Error file to be written to for failed alignments Default value: supermatcher.error
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
supermatcher is fully documented via the tfm(1) system.
Debian Med Packaging Team <email@example.com> Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.