Provided by: emboss_6.6.0-1_amd64
wordmatch - Finds regions of identity (exact matches) of two sequences
wordmatch -asequence seqset -bsequence seqall -wordsize integer [-dumpalign toggle] -outfile align [-logfile outfile] [-dumpfeat toggle] -aoutfeat featout -boutfeat featout wordmatch -help
wordmatch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Local" command group(s).
Input section -asequence seqset -bsequence seqall Required section -wordsize integer Default value: 4 Output section -dumpalign toggle Default value: Y -outfile align -logfile outfile Statistics on distribution of kmers and matches Default value: wordmatch.log -dumpfeat toggle Default value: Y -aoutfeat featout -boutfeat featout
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
wordmatch is fully documented via the tfm(1) system.
Debian Med Packaging Team <email@example.com> Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.