Provided by: libbio-perl-perl_1.6.923-1_all
Bio::Factory::AnalysisI - An interface to analysis tool factory
This is an interface module - you do not instantiate it. Use Bio::Tools::Run::AnalysisFactory module: use Bio::Tools::Run::AnalysisFactory; my $list = Bio::Tools::Run::AnalysisFactory->new->available_analyses;
This interface contains all public methods for showing available analyses and for creating objects representing them.
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Martin Senger (firstname.lastname@example.org)
Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
This software is provided "as is" without warranty of any kind.
This is actually the main documentation... If you try to call any of these methods directly on this "Bio::Factory::AnalysisI" object you will get a not implemented error message. You need to call them on a "Bio::Tools::Run::AnalysisFactory" object instead. available_categories Usage : $factory->available_categories; Returns : an array reference with the names of available categories Args : none The analysis tools may be grouped into categories by their functional similarity, or by the similar data types they deal with. This method shows all available such categories. available_analyses Usage : $factory->available_analyses; $factory->available_analyses ($category); Returns : an array reference with the names of all available analyses, or the analyses available in the given '$category' Args : none || category_name Show available analyses. Their names usually consist of category analysis names, separated by "::". create_analysis Usage : $factory->create_analysis ($name); Returns : a Bio::Tools::Run::Analyis object Args : analysis name A real factory method creating an analysis object. The created object gets all access and location information from the factory object.