Provided by: libbio-perl-perl_1.6.923-1_all
Bio::Search::BlastStatistics - An object for Blast statistics
# this is a wrapper to hold the statistics from a Blast report my $bs = $result->get_statistics(); # you can get a statistic generically, like this: my $kappa = $bs->get_statistic("kappa"); # or specifically, like this: my $kappa2 = $bs->get_kappa();
This is a basic container to hold the statistics returned from a Blast.
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. email@example.com - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: firstname.lastname@example.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Chad Matsalla
Email bioinformatics1 at dieselwurks dot com
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ get_statistic Title : get_statistic Usage : $statistic_object->get_statistic($statistic_name); Function: Get the value of a statistic named $statistic_name Returns : A scalar that should be a string Args : A scalar that should be a string set_statistic Title : set_statistic Usage : $statistic_object->set_statistic($statistic_name => $statistic_value); Function: Set the value of a statistic named $statistic_name to $statistic_value Returns : Void Args : A hash containing name=>value pairs