Provided by: libbio-perl-perl_1.6.923-1_all bug


       Bio::SeqIO::gbxml - GenBank sequence input/output stream using SAX


       It is probably best not to use this object directly, but rather go through the SeqIO
       handler system. To read a GenBank XML file:

          $stream = Bio::SeqIO->new( -file => $filename, -format => 'gbxml');

          while ( my $bioSeqObj = $stream->next_seq() ) {
               # do something with $bioSeqObj

       To write a Seq object to the current file handle in GenBank XML format:

          $stream->write_seq( -seq => $seqObj);

       If instead you would like a XML::DOM object containing the GBXML, use:

          my $newXmlObject = $stream->to_bsml( -seq => $seqObj);


       In addition to parts of the Bio:: hierarchy, this module uses:



       This object can transform Bio::Seq objects to and from GenBank XML flatfiles.


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AUTHOR - Ryan Golhar

       Email golharam-at-umdnj-dot-edu


       Title   : next_seq Usage   : my $bioSeqObj = $stream->next_seq Function: Retrieves the
       next sequence from a SeqIO::gbxml stream.  Returns : A reference to a Bio::Seq::RichSeq
       object Args    :