Provided by: libbio-perl-perl_1.6.923-1_all
Bio::TreeIO::cluster - A TreeIO driver module for parsing Algorithm::Cluster::treecluster() output
# do not use this module directly use Bio::TreeIO; use Algorithm::Cluster; my ($result, $linkdist) = Algorithm::Cluster::treecluster( distances => $matrix ); my $treeio = Bio::TreeIO->new( -format => 'cluster', -result => $result, -linkdist => $linkdist, -labels => $labels ); my $tree = $treeio->next_tree;
This is a driver module for parsing Algorithm::Cluster::treecluster() output.
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AUTHOR - Guillaume Rousse
Jason Stajich - jason-at-bioperl-dot-org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::TreeIO::cluster->new(); Function: Builds a new Bio::TreeIO::cluster object for reading Algorithm::Cluster::treecluster output Returns : Bio::TreeIO::cluster Args :-result => Algorithm::Cluster result -linkdist => distance between links -labels => node labels next_tree Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args : none write_tree Title : write_tree Usage : Function: Sorry not possible with this format Returns : none Args : none