NAME

       atlasquery - commandline tool to query brain atlases about stereotaxic coordinates

SYNOPSIS

       atlasquery -a "<atlasname>" [-m <maskimage>] [-c <X>,<Y>,<Z>]

DESCRIPTION

       atlasquery  provides  information  about  stereotaxic  brain coordinates by querying brain
       atlases. FSL provides nine different atlases that can be used with atlasquery. Please note
       that these atlases are covered by a non-commercial licenses and are not part of Debian.

       However,  as  the format of the atlases is documented in the HTML documentation of FSLView
       it is easy the produce new atlases (at least technically).

       The -a option which selects the to be queried atlas is compulsory.

       Atlases should  be  put  into  /usr/share/fsl/data/atlases.  By  setting  the  environment
       variable FSLATLASPATH to a different path one can customize this location.

       Please see /usr/share/doc/fslview/README.Debian for more information.

OPTIONS

       -V, --verbose
              Switch on diagnostic messages.

       -h, --help
              Display a short usage description.

       -m, --mask
              A mask image to use during structural lookups.

       -c, --dumpatlases
              Print a list of the available atlases.

BUGREPORTS

       If  you  discover  an  bugs  please  report  them  either  to  the  FSL mailing list or to
       fslview-bugs@fmrib.ox.ac.uk.

AUTHOR

       atlasqeury was written by Dave Flitney.

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>,  for  the  Debian
       project (but may be used by others).

SEE ALSO

       fslview(1), fsl(1)

       FSLView Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview

       FSL Homepage: http://www.fmrib.ox.ac.uk/fsl/