NAME

       fslview - viewer for 3d and 4d MRI data and DTI images

SYNOPSIS

       fslview [-m <viewmode>] [<baseimage> [imageoptions] ... ]

DESCRIPTION

       FSLView  is  an interactive display tool for 3D, 4D and DTI data. FSLView can read Analyze
       and NIFTI files, either uncompressed or compressed, and either  as  a  single  file  (e.g.
       image.nii.gz)  or  two files (e.g. image.hdr & image.img). FSLView supports multiple image
       overlays with indivdual color maps.

       There are four different image viewing modes:

              Ortho - the default view showing axial, orthogonal and sagittal slices.

              Lightbox - shows all axial slices simultaneously.

              Single - shows only a single slice - the orientation can be switched between axial,
              orthogonal and sagittal and you can also turn on auto-scrolling through the slices.

              3d - renders the volume in 3d with optional clipping of brain parts and overlays of
              metrical data.

       In addition to viewing images FSLView can be used to create image masks and manually  edit
       images.

OPTIONS

       -V, --verbose
              Switch on diagnostic messages.

       -h, --help
              Display a short usage description.

       -m, --mode 3d|ortho|lightbox
              Initial viewer mode (see above mode descriptions).

PER-IMAGE OPTIONS

       -l, --lut <name>
              Color  lookup  table  name. The full list is available via the FSLView GUI (e.g. on
              of: Greyscale, Red-Yellow, Blue-Lightblue, Red, Green,  Blue,  Yellow,  Pink,  Hot,
              Cool, Copper, ...)

       -b, --bricon <min>,<max>
              Initial bricon range, e.g., "2.3,6"

       -t, --trans <value>
              Initial transparency, e.g., 0.2

BUGREPORTS

       If  you  discover  an  bugs  please  report  them  either  to  the  FSL mailing list or to
       fslview-bugs@fmrib.ox.ac.uk.

AUTHOR

       FSLView was written by Dave Flitney, James Saunders, Mark Jenkinson,  Steve  Smith  and  V
       Rama Aravind.

       This  manual  page  was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian
       project (but may be used by others).

NOTES

       FSLView is able to use brain atlas data to identify locations in brain  volumes.  However,
       the  brain  atlases  that  come  with  FSL  are licensed under a non-free (non-commercial)
       license. Therefore they cannot be included in the FSLView  package,  which  only  contains
       free software.

       Please see /usr/share/doc/fslview/README.Debian for more information.

SEE ALSO

       atlasquery(1), fsl(1)

       FSLView Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview/index.html

       FSL Homepage: http://www.fmrib.ox.ac.uk/fsl/