NAME

       gt-tallymer-occratio - Compute occurrence ratio for a set of sequences represented by an
       enhanced suffix array.

SYNOPSIS

       gt tallymer occratio [options] -esa suffixerator-index [options]

DESCRIPTION

       -esa [string]
           specify suffixerator-index (mandatory option) (default: undefined)

       -minmersize [value]
           specify minimum mer size for which to compute the occurrence distribution (default: 0)

       -maxmersize [value]
           specify maximum mer size for which to compute the occurrence distribution (default: 0)

       -step [value]
           specify step size when specifying mer sizes (default: 1)

       -mersizes
           specify mer sizes as non-empty sequence of non decreasing positive integers

       -output
           use combination of the following keywords: unique nonunique nonuniquemulti relative
           total to specify kind of output

       -scan [yes|no]
           read suffixerator-index sequentially instead of mapping it to memory (default: no)

       -v [yes|no]
           be verbose (default: no)

       -help
           display help and exit

       -version
           display version information and exit

REPORTING BUGS

       Report bugs to <kurtz@zbh.uni-hamburg.de>.