NAME

       macs2_cmbreps - Model-based Analysis for ChIP-Sequencing

DESCRIPTION

       usage: macs2 cmbreps [-h] -i IFILE [IFILE ...] [-m {fisher,max,mean}]

              [--outdir OUTDIR] -o OFILE

   optional arguments:
       -h, --help
              show this help message and exit

       -i IFILE [IFILE ...]
              MACS  score in bedGraph for each replicate. Require exactly two files such as '-i A
              B'. REQUIRED

       -m {fisher,max,mean}, --method {fisher,max,mean}
              Method to use while combining scores from replicates.  1) fisher: Fisher's combined
              probability  test.  It  requires scores in ppois form (-log10 pvalues) from bdgcmp.
              Other types of scores for this method may cause cmbreps unexpected errors. 2)  max:
              take the maximum value from replicates for each genomic position. 3) mean: take the
              average value. Note, except for Fisher's method, max or mean will take scores AS IS
              which means they won't convert scores from log scale to linear scale or vice versa.

       --outdir OUTDIR
              If  specified  all  output  files  will  be written to that directory. Default: the
              current working directory

       -o OFILE, --ofile OFILE
              Output BEDGraph filename for combined scores.