NAME

       masai_indexer - Masai Indexer

       SYNOPSIS

              masai_indexer [OPTIONS] <GENOME FILE>

       DESCRIPTION

              Masai  is  a  fast and accurate read mapper based on approximate seeds and multiple
              backtracking.

              See http://www.seqan.de/projects/masai for more information.

              (c) Copyright 2011-2012 by Enrico Siragusa.

       -h, --help

              Displays this help message.

       --version

              Display version information

              Genome Index Options:

       -x, --index STR

              Select the genome index type. One of esa, sa, qgram, and fm.  Default: sa.

       -xp, --index-prefix STR

              Specify an genome index prefix name. Default: use the genome filename prefix.

              Output Options:

       -t, --tmp-folder STR

              Specify a huge temporary folder. Default: use the genome folder.

       VERSION

              masai_indexer version: 0.7.1 [14053] Last update 2013-05-16