NAME

       aevol - an in silico experimental evolution platform

SYNOPSIS

       aevol_misc_extract -h | --help
       aevol_misc_extract -V | --version
       aevol_misc_extract [-r GENER | -p POP_FILE] [-t PHEN_FILE] [-s SEQ_FILE] [-g NUM_GU] [-b]

DESCRIPTION

       Aevol  is  a  simulation  platform that allows one to let populations of digital organisms
       evolve in different conditions and study experimentally the mechanisms responsible for the
       structuration of the genome and the transcriptome.

       aevol_misc_extract
              extracts  the  genotype  and/or  data  about  the  phenotype  of individuals in the
              provided population and write them into text files easy to parse with e.g. matlab.

OPTIONS

       -h, --help
              print help, then exit

       -V, --version
              print version number, then exit

       -r GENER
              read generation GENER from a full aevol backup

       -p POP_FILE
              read the population saved in population file POP_FILE

       -t PHEN_FILE
              extract and save some infos  about  the  phenotypes  of  the  individuals  to  file
              PHEN_FILE

       -s SEQ_FILE
              extract and save the sequences of the individuals to file SEQ_FILE

       -g num_gu
              only treat this genetic unit (by default: treat all genetic units)

       -b
              only treat the best individual

SEE ALSO

       ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run