NAME

       bowtie-align-s - ultrafast memory-efficient short read aligner

DESCRIPTION

       usage: bowtie [-h] [-b | -i] [--verbose] [--debug] [--large-index]

              [--index INDEX]

   optional arguments:
       -h, --help
              show this help message and exit

       -b, --build

       -i, --inspect

       --verbose

       --debug

       --large-index

       --index INDEX

       64-bit  Built on Debian-reproducible Wed, 31 Jan 2018 14:04:41 +0100 Compiler: gcc version 7.3.0 Options:
       -O3  -Wl,--hash-style=both  -DWITH_TBB  -Wdate-time  -D_FORTIFY_SOURCE=2  -g  -O2  -fdebug-prefix-map=.=.
       -fstack-protector-strong     -Wformat     -Werror=format-security     -g    -O2    -fdebug-prefix-map=.=.
       -fstack-protector-strong    -Wformat    -Werror=format-security    -std=c++03    -Wl,-Bsymbolic-functions
       -Wl,-z,relro -Wl,-z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

bowtie-align-s version 1.2.2                      January 2018                                 BOWTIE-ALIGN-S(1)