NAME

       bp_chaos_plot - a chaos plot from DNA and RNA sequences

SYNOPSIS

         bp_chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT
               -o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT
               -w/--width=WIGHT -h/--height=HEIGHT

DESCRIPTION

       This scripts generates image files using GD image library to visualize nucleotide
       sequences using chaos plot.

OPTIONS

       Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.

       The default size of the image file is 600x400.

       The sequence input can be provided using any of the three methods:

       unnamed argument
            bp_chaos_plot filename

       named argument
            bp_chaos_plot -i filename

       standard input
            bp_chaos_plot < filename

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

       Email jason@bioperl.org

HISTORY

       This code is based on EMBOSS C code for chaos.c by Ian Longden.  Included are
       documentation from EMBOSS code:

       Chaos produces a chaos plot.  The original application is part of the ACEDB genome
       database package, written by ** Richard Durbin (MRC LMB, UK) rd@mrc-lmba.cam.ac.uk, and
       Jean Thierry-Mieg (CRBM du CNRS, France) mieg@crbm1.cnusc.fr