Provided by: bioperl_1.7.2-2_all bug


       bp_heterogeneity_test - a test for distinguishing between selection and population


       heterogenetity_test -mut_1/--mutsyn synonymous_mut_count -mut_2/--mutnon nonsyn_mut_count
       -s/--smaplesize sample_size [-i/--iterations iterations] [-o/--observed observed_D]
       [-v/--verbose] [--silent ] [-m/--method tajimaD or fuD] [--precision]

       This is an implementation of the Heterogenetity test as described in Hahn MW, Rausher MD,
       and Cunningham CW. 2002. Genetics 161(1):11-20.

        Options in brackets above are optional

        -s or --samplesize samplesize
        -mut_1 or --mutsyn synonymous mutation count
        -mut_2 or --mutnon nonsynonmous mutation count
        -i or --iterations number of iterations
        -o or --observed   observed D
        -m or --method     tajimaD or fuD  for Tajima's D or Fu and Li's D
        -v or --verbose    print out extra verbose messages
        --silent           Be extra quiet
        --precision        Level of precision - specify the number of digits
                          (default 4)

   AUTHOR Matthew Hahn <>
       For more information contact:

       Matthew Hahn, <> Jason Stajich <jason-at-bioperl-dot-org>