Provided by: bioperl-run_1.7.1-3_all bug


       multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
                         an INDEX file


       multi_hmmsearch -p hmm_file [-i] -f index_file


       Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run
       components but it's useful.

   Mandatory Options:
         -p  HMM profile to use for the search.
         -f  INDEX file that contains a list of FASTA files for the multiple

   Special Options:
         -i  Create a new index file with the resulting hmms files. This is
             useful if you want to pass this list as input arguments into
             another programs.
         -h  Show this documentation.


   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list. Your participation
       is much appreciated.
                  - General discussion  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:


         Mauricio Herrera Cuadra <>