Provided by: bioperl_1.7.2-2_all bug


       bp_tree2pag - convert Bio::TreeIO parseable format trees to pagel format


        bp_tree2pag -if nexus -i > file.pag

        # OR pipe in through STDIN, and use newick format instead

        cat file.newick | bp_tree2pag -if newick > file.nh

        # OR specify an output and input

        bp_tree2pag -o file.pag -i file.newick


       Convert TreeIO parseable files into Pagel format tree files.  Be warned that pagel format
       only really supports a single tree per file so.  Also Pagel parsing is not yet available
       in bioperl.