NAME

       cathparse - Generates DCF file from raw CATH files.

SYNOPSIS

       cathparse -listfile infile -domfile infile -namesfile infile -outfile outfile -logfile outfile

       cathparse -help

DESCRIPTION

       cathparse is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Utils:Database creation" command group(s).

OPTIONS

   Input section
       -listfile infile
           This option specifies the name of raw CATH classification file (caths.list.vX.X) (input). The raw
           CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk
           (/pub/cathdata/v2.4). Default value: caths.list.v2.4

       -domfile infile
           This option specifies the name of raw CATH classification file (domlist.vX.X) (input). The raw CATH
           parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk
           (/pub/cathdata/v2.4). Default value: domlist.v2.4

       -namesfile infile
           This option specifies the name of raw CATH classification file (CAT.names.all.vX.X) (input). The raw
           CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk
           (/pub/cathdata/v2.4). Default value: CAT.names.all.v2.4

   Output section
       -outfile outfile
           This option specifies the name of CATH DCF file (domain classification file) (output). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS. Default value: Ecath.dat

       -logfile outfile
           This option specifies the name of the CATHPARSE log file. Default value: cathparse.log

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       cathparse is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

DOMAINATRIX 0.1.0+20100721                         08/11/2010                                      CATHPARSE(1e)