NAME

       deepnano_basecall_no_metrichor - basecaller for Oxford Nanopore MinION reads based on deep
       recurrent neural networks

SYNOPSIS

       usage: deepnano_basecall_no_metrichor [ARGS] [reads [reads ...]]

DESCRIPTION

   positional arguments:
              reads

   optional arguments:
       -h, --help
              show this help message and exit

       --template_net TEMPLATE_NET
              path to network which basecalls template (has reasonable default)

       --complement_net COMPLEMENT_NET
              path to network which basecalls complement (has reasonable default)

       --big_net BIG_NET
              path to network which basecalls 2D (has reasonable default)

       --max_2d_length MAX_2D_LENGTH
              Max length for 2d basecall

       --type TYPE
              One of: template, complement, 2d, all, use comma to separate multiple options, eg.:
              template,complement type of basecalling output (defaults to all)

       --output OUTPUT
              output filename

       --directory DIRECTORY
              Directory where read files are stored

       --watch WATCH
              Watched directory

EXAMPLES

       Using without metrichor:
              OMP_NUM_THREADS=1 deepnano_basecall_no_metrichor <list of fast5 files>

       If you want to watch a directory (watchdog must be installed)

              OMP_NUM_THREADS=1 deepnano_basecall_no_metrichor --watch <directory name>

SEE ALSO

       deepnano_basecall(1)

AUTHOR

       This manpage was written by Çağrı ULAŞ for the Debian distribution and can be used for any
       other usage of the program.

BUGS

       Report bugs to <https://bitbucket.org/vboza/deepnano/issues>

deepnano_basecall_no_metrichor 0.0+2011061February 2017         DEEPNANO_BASECALL_NO_METRICHOR(1)