NAME

       iva_qc_make_db - make a database as input for iva_qc

DESCRIPTION

       usage: iva_qc_make_db [options] <output directory>

   positional arguments:
       Directory_name
              Name of output directory

   optional arguments:
       -h, --help
              show this help message and exit

       --add_to_ref Filename
              Filename  of  Genbank  IDs  or GI numbers to be added to database. Format is: whitespace separated
              list of GI numbers on each line. One line defines one genome (e.g. flu is 8 segments, so put 8  GI
              numbers on one line for one flu reference)

       --skip_viruses
              Do  not  run  kraken-build  --download-library  viruses when building the database. If this option
              used, then --add_to_ref must also be used

       --threads INT
              Number of threads to use [1]

       --minimizer_len INT
              Number to pass to kraken-build minimizer_len option [13]

       --max_db_size INT
              Number to pass to kraken-build max_db_size option [3]

       --verbose
              Be verbose

       --version
              show program's version number and exit

iva_qc_make_db 1.0.8                               April 2018                                  IVA_QC_MAKE_DB(1)