NAME

       pysurfer - visualize cortical surface reconstruction from Freesurfer

DESCRIPTION

       22:18:01:  Warning:  Mismatch  between the program and library build versions detected.  The library used
       3.0 (wchar_t,compiler with C++ ABI  1010,wx  containers,compatible  with  2.8),  and  wxPython  used  3.0
       (wchar_t,compiler  with  C++  ABI  1009,wx  containers,compatible  with 2.8).  usage: pysurfer subject_id
       hemisphere surface [options]

       PySurfer is a package  for  visualization  and  interaction  with  cortical  surface  representations  of
       neuroimaging data from Freesurfer.

       The  command-line  program  pysurfer  is  designed to largely replicate Freesufer's tksurfer command-line
       interface in the format and style  of  arguments  it  accepts,  and,  like  tksurfer,  invoking  it  will
       initialize  a  visualization  in an external window and begin an IPython session in the terminal, through
       which the visualization can be manipulated.

       The visualization interface is exposed through methods on the `brain' variable that will exist in IPython
       namespace when the program finishes loading. Please see the PySurfer documentation for  more  information
       about how to interact with the Brain object.

   positional arguments:
       subject_id
              subject id as in subjects dir

       hemi   hemisphere to load

       surf   surface mesh (e.g. 'pial', 'inflated')

   optional arguments:
       -h, --help
              show this help message and exit

       -morphometry MEAS
              load morphometry file (e.g. thickness, curvature)

       -annotation ANNOT
              load annotation (by name or filepath)

       -label LABEL
              load label (by name or filepath

       -borders
              only show label/annot borders

       -overlay FILE
              load scalar overlay file

       -range MIN MAX
              overlay threshold and saturation point

       -min MIN
              overlay threshold

       -max MAX
              overlay saturation point

       -sign {abs,pos,neg}
              overlay sign

       -name NAME
              name to use for the overlay

       -size [SIZE]
              size of the display window (in pixels)

       -background COLOR
              background color for display

       -foreground COLOR
              foreground color for display

       -cortex COLOR
              colormap or color for rendering the cortex

       -alpha COLOR
              specifies opacity for the cortical surface

       -title TITLE
              title to use for the figure

       -views [VIEWS [VIEWS ...]]
              view list (space-separated) to use

pysurfer 0.7                                       March 2017                                        PYSURFER(1)