NAME

       pysurfer - visualize cortical surface reconstruction from Freesurfer

DESCRIPTION

       22:18:01:  Warning: Mismatch between the program and library build versions detected.  The
       library used 3.0 (wchar_t,compiler with C++ ABI 1010,wx containers,compatible  with  2.8),
       and  wxPython  used  3.0 (wchar_t,compiler with C++ ABI 1009,wx containers,compatible with
       2.8).  usage: pysurfer subject_id hemisphere surface [options]

       PySurfer  is  a  package  for  visualization  and  interaction   with   cortical   surface
       representations of neuroimaging data from Freesurfer.

       The  command-line  program  pysurfer is designed to largely replicate Freesufer's tksurfer
       command-line interface in the  format  and  style  of  arguments  it  accepts,  and,  like
       tksurfer,  invoking  it will initialize a visualization in an external window and begin an
       IPython session in the terminal, through which the visualization can be manipulated.

       The visualization interface is exposed through methods on the `brain' variable  that  will
       exist  in  IPython  namespace  when  the program finishes loading. Please see the PySurfer
       documentation for more information about how to interact with the Brain object.

   positional arguments:
       subject_id
              subject id as in subjects dir

       hemi   hemisphere to load

       surf   surface mesh (e.g. 'pial', 'inflated')

   optional arguments:
       -h, --help
              show this help message and exit

       -morphometry MEAS
              load morphometry file (e.g. thickness, curvature)

       -annotation ANNOT
              load annotation (by name or filepath)

       -label LABEL
              load label (by name or filepath

       -borders
              only show label/annot borders

       -overlay FILE
              load scalar overlay file

       -range MIN MAX
              overlay threshold and saturation point

       -min MIN
              overlay threshold

       -max MAX
              overlay saturation point

       -sign {abs,pos,neg}
              overlay sign

       -name NAME
              name to use for the overlay

       -size [SIZE]
              size of the display window (in pixels)

       -background COLOR
              background color for display

       -foreground COLOR
              foreground color for display

       -cortex COLOR
              colormap or color for rendering the cortex

       -alpha COLOR
              specifies opacity for the cortical surface

       -title TITLE
              title to use for the figure

       -views [VIEWS [VIEWS ...]]
              view list (space-separated) to use