NAME

       temporal_signal  - Calculates the root-to-tip regression and quantifies the 'clock-i-ness'
       of a tree

SYNOPSIS

       temporal_signal [-h] --tree  TREE  --dates  DATES  [--aln  ALN]  [--infer_gtr]  [--reroot]
       [--plot] [--verbose VERBOSE]

DESCRIPTION

       Calculates  the  root-to-tip  regression and quantifies the 'clock-i-ness' of the tree. It
       will optionally reroot the tree to maximize the clock-like signal and  recalculate  branch
       length.

OPTIONS

       -h, --help
              show this help message and exit

       --tree TREE
              newick file with tree

       --dates DATES
              csv with dates for nodes with 'node_name, date' where date is float (as in 2012.15)

       --aln ALN
              fasta file with input sequences

       --infer_gtr
              infer substitution model

       --reroot
              reroot  the  tree  to maximize the correlation of root-totip distance with sampling
              time

       --plot

       --verbose VERBOSE
              verbosity of output 0-6

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used  for
       any other usage of the program.