Provided by: librheolef-dev_6.7-6_amd64 
NAME
geo - finite element mesh (rheolef-6.7)
SYNOPSYS
Distributed finite element mesh.
IMPLEMENTATION
template <class T>
class geo_basic<T,sequential> : public smart_pointer_clone<geo_abstract_rep<T,sequential> > {
public:
// typedefs:
typedef sequential memory_type;
typedef geo_abstract_rep<T,sequential> rep;
typedef geo_rep<T,sequential> rep_geo_rep;
typedef smart_pointer_clone<rep> base;
typedef typename rep::size_type size_type;
typedef typename rep::node_type node_type;
typedef typename rep::variant_type variant_type;
typedef typename rep::reference reference;
typedef typename rep::const_reference const_reference;
typedef typename rep::iterator iterator;
typedef typename rep::const_iterator const_iterator;
typedef typename rep::iterator_by_variant iterator_by_variant;
typedef typename rep::const_iterator_by_variant const_iterator_by_variant;
typedef typename rep::coordinate_type coordinate_type;
// allocators:
geo_basic ();
geo_basic (std::string name, const communicator& comm = communicator());
void load (std::string name, const communicator& comm = communicator());
geo_basic (const domain_indirect_basic<sequential>& dom, const geo_basic<T,sequential>& omega);
// build from_list (for level set)
geo_basic (
const geo_basic<T,sequential>& lambda,
const disarray<point_basic<T>,sequential>& node_list,
const std::array<disarray<geo_element_auto<heap_allocator<size_type> >,sequential>,
reference_element::max_variant>& elt_list)
: base (new_macro(rep_geo_rep(lambda,node_list,elt_list))) {}
// accessors:
std::string name() const { return base::data().name(); }
std::string familyname() const { return base::data().familyname(); }
size_type dimension() const { return base::data().dimension(); }
size_type map_dimension() const { return base::data().map_dimension(); }
size_type serial_number() const { return base::data().serial_number(); }
size_type variant() const { return base::data().variant(); }
coordinate_type coordinate_system() const { return base::data().coordinate_system(); }
std::string coordinate_system_name() const { return space_constant::coordinate_system_name(coordinate_system()); }
const basis_basic<T>& get_piola_basis() const { return base::data().get_piola_basis(); }
size_type order() const { return base::data().get_piola_basis().degree(); }
const node_type& xmin() const { return base::data().xmin(); }
const node_type& xmax() const { return base::data().xmax(); }
const T& hmin() const { return base::data().hmin(); }
const T& hmax() const { return base::data().hmax(); }
const distributor& geo_element_ownership(size_type dim) const { return base::data().geo_element_ownership(dim); }
const geo_size& sizes() const { return base::data().sizes(); }
const geo_size& ios_sizes() const { return base::data().ios_sizes(); }
const_reference get_geo_element (size_type dim, size_type ige) const { return base::data().get_geo_element (dim, ige); }
reference get_geo_element (size_type dim, size_type ige) { return base::data().get_geo_element (dim, ige); }
const_reference dis_get_geo_element (size_type dim, size_type dis_ige) const
{ return get_geo_element (dim, dis_ige); }
const geo_element& bgd2dom_geo_element (const geo_element& bgd_K) const { return base::data().bgd2dom_geo_element (bgd_K); }
const geo_element& dom2bgd_geo_element (const geo_element& dom_K) const { return base::data().dom2bgd_geo_element (dom_K); }
size_type neighbour (size_type ie, size_type loc_isid) const {
return base::data().neighbour (ie, loc_isid); }
void neighbour_guard() const { base::data().neighbour_guard(); }
size_type n_node() const { return base::data().n_node(); }
const node_type& node(size_type inod) const { return base::data().node(inod); }
const node_type& dis_node(size_type dis_inod) const { return base::data().dis_node(dis_inod); }
void dis_inod (const geo_element& K, std::vector<size_type>& dis_inod) const {
return base::data().dis_inod(K,dis_inod); }
node_type piola (const geo_element& K, const node_type& hat_x) const { return base::data().piola (K, hat_x); }
const disarray<node_type,sequential>& get_nodes() const { return base::data().get_nodes(); }
size_type dis_inod2dis_iv (size_type dis_inod) const { return base::data().dis_inod2dis_iv(dis_inod); }
size_type n_domain_indirect () const { return base::data().n_domain_indirect (); }
bool have_domain_indirect (const std::string& name) const { return base::data().have_domain_indirect (name); }
const domain_indirect_basic<sequential>& get_domain_indirect (size_type i) const {
return base::data().get_domain_indirect (i); }
const domain_indirect_basic<sequential>& get_domain_indirect (const std::string& name) const {
return base::data().get_domain_indirect (name); }
void insert_domain_indirect (const domain_indirect_basic<sequential>& dom) const {
base::data().insert_domain_indirect (dom); }
size_type n_domain () const { return base::data().n_domain_indirect (); }
geo_basic<T,sequential> get_domain (size_type i) const;
geo_basic<T,sequential> operator[] (const std::string& name) const;
geo_basic<T,sequential> boundary() const;
geo_basic<T,sequential> internal_sides() const;
geo_basic<T,sequential> sides() const;
size_type seq_locate (
const point_basic<T>& x,
size_type dis_ie_guest = std::numeric_limits<size_type>::max()) const
{ return base::data().seq_locate (x, dis_ie_guest); }
size_type dis_locate (
const point_basic<T>& x,
size_type dis_ie_guest = std::numeric_limits<size_type>::max()) const
{ return base::data().dis_locate (x, dis_ie_guest); }
void locate (
const disarray<point_basic<T>, sequential>& x,
disarray<size_type, sequential>& dis_ie) const
{ return base::data().locate (x, dis_ie); }
size_type seq_trace_move (
const point_basic<T>& x,
const point_basic<T>& v,
point_basic<T>& y) const
{ return base::data().seq_trace_move (x,v,y); }
size_type dis_trace_move (
const point_basic<T>& x,
const point_basic<T>& v,
point_basic<T>& y) const
{ return base::data().dis_trace_move (x,v,y); }
void trace_ray_boundary (
const disarray<point_basic<T>,sequential>& x,
const disarray<point_basic<T>,sequential>& v,
disarray<size_type, sequential>& dis_ie,
disarray<point_basic<T>,sequential>& y) const
{ return base::data().trace_ray_boundary (x,v,dis_ie,y); }
void trace_move (
const disarray<point_basic<T>,sequential>& x,
const disarray<point_basic<T>,sequential>& v,
disarray<size_type, sequential>& dis_ie,
disarray<point_basic<T>,sequential>& y) const
{ return base::data().trace_move (x,v,dis_ie,y); }
size_type seq_nearest (
const point_basic<T>& x,
point_basic<T>& x_nearest) const
{ return base::data().seq_nearest (x, x_nearest); }
size_type dis_nearest (
const point_basic<T>& x,
point_basic<T>& x_nearest) const
{ return base::data().dis_nearest (x, x_nearest); }
void nearest (
const disarray<point_basic<T>,sequential>& x,
disarray<point_basic<T>,sequential>& x_nearest,
disarray<size_type, sequential>& dis_ie) const
{ base::data().nearest (x, x_nearest, dis_ie); }
// modifiers:
void set_name (std::string name);
void set_dimension (size_type dim);
void set_serial_number (size_type i);
void reset_order (size_type order);
void set_coordinate_system (coordinate_type sys_coord);
void set_coordinate_system (std::string sys_coord_name) { set_coordinate_system (space_constant::coordinate_system(sys_coord_name)); }
void set_nodes (const disarray<node_type,sequential>& x);
void build_by_subdividing (const geo_basic<T,sequential>& omega, size_type k);
void build_from_data (
const geo_header& hdr,
const disarray<node_type, sequential>& node,
std::array<disarray<geo_element_auto<heap_allocator<size_type> >,sequential, heap_allocator<size_type> >, reference_element::max_variant>&
tmp_geo_element,
bool do_upgrade);
// extended accessors:
const communicator& comm() const { return geo_element_ownership (0).comm(); }
size_type size(size_type dim) const { return base::data().geo_element_ownership(dim).size(); }
size_type dis_size(size_type dim) const { return base::data().geo_element_ownership(dim).dis_size(); }
size_type size() const { return size (map_dimension()); }
size_type dis_size() const { return dis_size (map_dimension()); }
size_type n_vertex() const { return size (0); }
size_type dis_n_vertex() const { return dis_size (0); }
const_reference operator[] (size_type ie) const { return get_geo_element (map_dimension(), ie); }
reference operator[] (size_type ie) { return get_geo_element (map_dimension(), ie); }
const_iterator begin (size_type dim) const { return base::data().begin(dim); }
const_iterator end (size_type dim) const { return base::data().end (dim); }
const_iterator begin () const { return begin(map_dimension()); }
const_iterator end () const { return end (map_dimension()); }
const_iterator_by_variant begin_by_variant (variant_type variant) const
{ return base::data().begin_by_variant (variant); }
const_iterator_by_variant end_by_variant (variant_type variant) const
{ return base::data(). end_by_variant (variant); }
const geo_basic<T,sequential>& get_background_geo() const; // code in geo_domain.h
geo_basic<T,sequential> get_background_domain() const;
// for compatibility with distributed interface:
size_type ige2ios_dis_ige (size_type dim, size_type ige) const { return ige; }
size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const { return dis_ige; }
size_type ios_ige2dis_ige (size_type dim, size_type ios_ige) const { return ios_ige; }
// comparator:
bool operator== (const geo_basic<T,sequential>& omega2) const { return base::data().operator== (omega2.data()); }
// i/o:
idiststream& get (idiststream& ips);
odiststream& put (odiststream& ops) const;
void save (std::string filename = "") const;
void dump (std::string name) const { base::data().dump (name); }
bool check (bool verbose = true) const { return base::data().check(verbose); }
};
IMPLEMENTATION
template <class T>
class geo_basic<T,distributed> : public smart_pointer_clone<geo_abstract_rep<T,distributed> > {
public:
// typedefs:
typedef distributed memory_type;
typedef geo_abstract_rep<T,distributed> rep;
typedef geo_rep<T,distributed> rep_geo_rep;
typedef smart_pointer_clone<rep> base;
typedef typename rep::size_type size_type;
typedef typename rep::node_type node_type;
typedef typename rep::variant_type variant_type;
typedef typename rep::node_map_type node_map_type;
typedef typename rep::reference reference;
typedef typename rep::const_reference const_reference;
typedef typename rep::iterator iterator;
typedef typename rep::const_iterator const_iterator;
typedef typename rep::iterator_by_variant iterator_by_variant;
typedef typename rep::const_iterator_by_variant const_iterator_by_variant;
typedef typename rep::coordinate_type coordinate_type;
// allocators:
geo_basic ();
geo_basic (std::string name, const communicator& comm = communicator());
void load (std::string name, const communicator& comm = communicator());
geo_basic (const domain_indirect_basic<distributed>& dom, const geo_basic<T,distributed>& omega);
// build from_list (for level set)
geo_basic (
const geo_basic<T,distributed>& lambda,
const disarray<point_basic<T>,distributed>& node_list,
const std::array<disarray<geo_element_auto<heap_allocator<size_type> >,distributed>,
reference_element::max_variant>& elt_list)
: base (new_macro(rep_geo_rep(lambda,node_list,elt_list))) {}
// accessors:
std::string name() const { return base::data().name(); }
std::string familyname() const { return base::data().familyname(); }
size_type dimension() const { return base::data().dimension(); }
size_type map_dimension() const { return base::data().map_dimension(); }
size_type serial_number() const { return base::data().serial_number(); }
size_type variant() const { return base::data().variant(); }
coordinate_type coordinate_system() const { return base::data().coordinate_system(); }
std::string coordinate_system_name() const { return space_constant::coordinate_system_name(coordinate_system()); }
const basis_basic<T>& get_piola_basis() const { return base::data().get_piola_basis(); }
size_type order() const { return base::data().get_piola_basis().degree(); }
const node_type& xmin() const { return base::data().xmin(); }
const node_type& xmax() const { return base::data().xmax(); }
const T& hmin() const { return base::data().hmin(); }
const T& hmax() const { return base::data().hmax(); }
const distributor& geo_element_ownership(size_type dim) const
{ return base::data().geo_element_ownership (dim); }
const geo_size& sizes() const { return base::data().sizes(); }
const geo_size& ios_sizes() const { return base::data().ios_sizes(); }
const_reference get_geo_element (size_type dim, size_type ige) const
{ return base::data().get_geo_element (dim, ige); }
const_reference dis_get_geo_element (size_type dim, size_type dis_ige) const
{ return base::data().dis_get_geo_element (dim, dis_ige); }
const geo_element& bgd2dom_geo_element (const geo_element& bgd_K) const
{ return base::data().bgd2dom_geo_element (bgd_K); }
const geo_element& dom2bgd_geo_element (const geo_element& dom_K) const
{ return base::data().dom2bgd_geo_element (dom_K); }
size_type neighbour (size_type ie, size_type loc_isid) const {
return base::data().neighbour (ie, loc_isid); }
void neighbour_guard() const { base::data().neighbour_guard(); }
distributor geo_element_ios_ownership (size_type dim) const {
return base::data().geo_element_ios_ownership (dim); }
size_type ige2ios_dis_ige (size_type dim, size_type ige) const {
return base::data().ige2ios_dis_ige (dim,ige); }
size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const {
return base::data().dis_ige2ios_dis_ige (dim,dis_ige); }
size_type ios_ige2dis_ige (size_type dim, size_type ios_ige) const {
return base::data().ios_ige2dis_ige (dim, ios_ige); }
size_type n_node() const { return base::data().n_node(); }
const node_type& node(size_type inod) const { return base::data().node(inod); }
const node_type& dis_node(size_type dis_inod) const { return base::data().dis_node(dis_inod); }
void dis_inod (const geo_element& K, std::vector<size_type>& dis_inod) const {
return base::data().dis_inod(K,dis_inod); }
node_type piola (const geo_element& K, const node_type& hat_x) const { return base::data().piola (K, hat_x); }
const disarray<node_type,distributed>& get_nodes() const { return base::data().get_nodes(); }
size_type n_domain_indirect () const { return base::data().n_domain_indirect (); }
bool have_domain_indirect (const std::string& name) const { return base::data().have_domain_indirect (name); }
const domain_indirect_basic<distributed>& get_domain_indirect (size_type i) const {
return base::data().get_domain_indirect (i); }
const domain_indirect_basic<distributed>& get_domain_indirect (const std::string& name) const {
return base::data().get_domain_indirect (name); }
void insert_domain_indirect (const domain_indirect_basic<distributed>& dom) const {
base::data().insert_domain_indirect (dom); }
size_type n_domain () const { return base::data().n_domain_indirect (); }
geo_basic<T,distributed> get_domain (size_type i) const;
geo_basic<T,distributed> operator[] (const std::string& name) const;
geo_basic<T,distributed> boundary() const;
geo_basic<T,distributed> internal_sides() const;
geo_basic<T,distributed> sides() const;
size_type seq_locate (
const point_basic<T>& x,
size_type dis_ie_guest = std::numeric_limits<size_type>::max()) const
{ return base::data().seq_locate (x, dis_ie_guest); }
size_type dis_locate (
const point_basic<T>& x,
size_type dis_ie_guest = std::numeric_limits<size_type>::max()) const
{ return base::data().dis_locate (x, dis_ie_guest); }
void locate (const disarray<point_basic<T>, distributed>& x, disarray<size_type, distributed>& dis_ie) const
{ return base::data().locate (x, dis_ie); }
size_type seq_trace_move (
const point_basic<T>& x,
const point_basic<T>& v,
point_basic<T>& y) const
{ return base::data().seq_trace_move (x,v,y); }
size_type dis_trace_move (
const point_basic<T>& x,
const point_basic<T>& v,
point_basic<T>& y) const
{ return base::data().dis_trace_move (x,v,y); }
void trace_ray_boundary (
const disarray<point_basic<T>,distributed>& x,
const disarray<point_basic<T>,distributed>& v,
disarray<size_type, distributed>& dis_ie,
disarray<point_basic<T>,distributed>& y) const
{ return base::data().trace_ray_boundary (x,v,dis_ie,y); }
void trace_move (
const disarray<point_basic<T>,distributed>& x,
const disarray<point_basic<T>,distributed>& v,
disarray<size_type, distributed>& dis_ie,
disarray<point_basic<T>,distributed>& y) const
{ return base::data().trace_move (x,v,dis_ie,y); }
size_type seq_nearest (
const point_basic<T>& x,
point_basic<T>& x_nearest) const
{ return base::data().seq_nearest (x, x_nearest); }
size_type dis_nearest (
const point_basic<T>& x,
point_basic<T>& x_nearest) const
{ return base::data().dis_nearest (x, x_nearest); }
void nearest (
const disarray<point_basic<T>,distributed>& x,
disarray<point_basic<T>,distributed>& x_nearest,
disarray<size_type, distributed>& dis_ie) const
{ base::data().nearest (x, x_nearest, dis_ie); }
// modifiers:
void set_nodes (const disarray<node_type,distributed>& x);
void reset_order (size_type order);
size_type dis_inod2dis_iv (size_type dis_inod) const { return base::data().dis_inod2dis_iv(dis_inod); }
void set_coordinate_system (coordinate_type sys_coord);
void set_coordinate_system (std::string sys_coord_name) { set_coordinate_system (space_constant::coordinate_system(sys_coord_name)); }
void set_dimension (size_type dim);
void set_serial_number (size_type i);
void set_name (std::string name);
void build_by_subdividing (const geo_basic<T,distributed>& omega, size_type k);
// extended accessors:
size_type size(size_type dim) const { return base::data().geo_element_ownership(dim).size(); }
size_type dis_size(size_type dim) const { return base::data().geo_element_ownership(dim).dis_size(); }
const communicator& comm() const { return geo_element_ownership (0).comm(); }
size_type size() const { return size (map_dimension()); }
size_type dis_size() const { return dis_size (map_dimension()); }
size_type n_vertex() const { return size (0); }
size_type dis_n_vertex() const { return dis_size (0); }
const_reference operator[] (size_type ie) const
{ return get_geo_element (map_dimension(), ie); }
const_iterator begin (size_type dim) const { return base::data().begin(dim); }
const_iterator end (size_type dim) const { return base::data().end (dim); }
const_iterator begin () const { return begin(map_dimension()); }
const_iterator end () const { return end (map_dimension()); }
const_iterator_by_variant begin_by_variant (variant_type variant) const
{ return base::data().begin_by_variant (variant); }
const_iterator_by_variant end_by_variant (variant_type variant) const
{ return base::data(). end_by_variant (variant); }
const geo_basic<T,distributed>& get_background_geo() const; // code in geo_domain.h
geo_basic<T,distributed> get_background_domain() const;
// comparator:
bool operator== (const geo_basic<T,distributed>& omega2) const { return base::data().operator== (omega2.data()); }
// i/o:
odiststream& put (odiststream& ops) const { return base::data().put (ops); }
idiststream& get (idiststream& ips);
void save (std::string filename = "") const;
bool check (bool verbose = true) const { return base::data().check(verbose); }
// utilities:
void set_ios_permutation (
std::array<size_type,reference_element::max_variant>& loc_ndof_by_variant,
disarray<size_type,distributed>& idof2ios_dis_idof) const
{ base::data().set_ios_permutation (loc_ndof_by_variant, idof2ios_dis_idof); }
};