bionic (3) Bio::DB::GFF::Aggregator::match_gap.3pm.gz

Provided by: gbrowse_2.56+dfsg-3build1_all bug

NAME
       Bio::DB::GFF::Aggregator::match_gap -- GFF3 match aggregator


SYNOPSIS
        -------------------------------------------------
        Aggregator method: match_gap
        Main method:       match
        Sub methods:       match
        -------------------------------------------------


DESCRIPTION
       This aggregator is used for GFF3 style gapped alignments, in which there is a single feature of method
       'match' with a 'Gap' attribute.

       The 'Gap' attribute's format consists of a series of (operartion,length) pairs separated by space
       characters, for example: 'M8 D3 M6'.  (see GFF reference for complete explanation)

       This module only recognizes the M and D operators, which should be sufficient for simple nucleotide to
       nucleotide alignments.


BUGS
       None reported.


SEE ALSO
       Bio::DB::GFF, Bio::DB::GFF::Aggregator


AUTHOR
       Dmitri Bichko

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.