bionic (3) Bio::Map::LinkagePosition.3pm.gz

NAME

       Bio::Map::LinkagePosition - Create a Position for a Marker that will be placed
       on a Bio::Map::LinkageMap

SYNOPSIS

           use Bio::Map::Position;
           my $position = Bio::Map::LinkagePosition->new(-positions => 1,
                                                        -distance => 22.1 );

               # can get listing of positions
           my @positions = $position->each_position;

DESCRIPTION

       Position for a Bio::Map::MarkerI compliant object that will be placed on a Bio::Map::LinkageMap. See
       Bio::Map::MarkerI and Bio::Map::LinkageMap for details

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Chad Matsalla

       Email bioinformatics1@dieselwurks.com

CONTRIBUTORS

       Lincoln Stein, lstein@cshl.org Heikki Lehvaslaiho, heikki-at-bioperl-dot-org Jason Stajich
       jason@bioperl.org Sendu Bala bix@sendu.me.uk

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded
       with a _

   new
        Title   : new
        Usage   : my $obj = Bio::Map::LinkagePosition->new(-positions => $position,
                                                                          -distance => $distance);
        Function: Builds a new Bio::Map::LinkagePosition object
        Returns : Bio::Map::LinkagePosition
        Args    : -order => the relative order of this marker on a linkage map
                      -positions => positions on a map

   Bio::Map::PositionI methods
   order
        Title   : order
        Usage   : $o_position->order($order)
                  my $order = $o_position->order()
        Function: get/set the order position of this position in a map
        Returns : int
        Args    : none to get, int to set