bionic (3) Bio::Search::Result::INFERNALResult.3pm.gz

NAME

       Bio::Search::Result::INFERNALResult - A Result object for INFERNAL results

SYNOPSIS

           # typically one gets Results from a SearchIO stream
           use Bio::SearchIO;
           my $io = Bio::SearchIO->new(-format => 'infernal',
                                       -file   => 't/data/cmsearch_output.txt');
           while( my $result = $io->next_result ) {
               while( my $hit = $result->next_hit ) {
                 print join(" ", $result->query_name, $result->algorithm, $result->num_hits), "\n";
               }
           }

DESCRIPTION

       This object is a specialization of Bio::Search::Result::GenericResult. There is one extra method called
       cm_name.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Paul Cantalupo

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded
       with a _

   new
        Title   : new
        Usage   : my $obj = Bio::Search::Result::INFERNALResult->new();
        Function: Builds a new Bio::Search::Result::INFERNALResult object
        Returns : Bio::Search::Result::INFERNALResult
        Args    : -cm_name    => string, name of covariance model (CM) file.
                  plus Bio::Search::Result::GenericResult parameters

   cm_name
        Title   : cm_name
        Usage   : $obj->cm_name($newvalue)
        Function: Get/Set value of the covariance model file name (cm_name)
        Returns : value of cm_name
        Args    : newvalue (optional)