bionic (3) TFBS::PatternGen::Gibbs::Motif.3pm.gz

NAME

       TFBS::PatternGen::Gibbs::Motif - class for unprocessed motifs and associated numerical scores created by
       the Gibbs program

SYNOPSIS

DESCRIPTION

       TFBS::PatternGen::Gibbs::Motif is used to store and manipulate unprocessed motifs and associated
       numerical scores created by the Gibbs program. You do not normally want to create a
       TFBS::PatternGen::Gibbs::Motif yourself. They are created by running TFBS::PatternGen::Gibbs

FEEDBACK

       Please send bug reports and other comments to the author.

AUTHOR - Boris Lenhard and Wynand Alkema

       Boris Lenhard <Boris.Lenhard@cgb.ki.se> Wynand Alkema <Wynand.Alkema@cgb.ki.se>

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are preceded with an
       underscore.

   MAP
        Title   : MAP
        Usage   : my $map_score = $motif->MAP;
        Function: returns MAP score for the detected motif
                  (This is a backward compatibility method. For consistency,
                   you should use $motif->tag('MAP_score') instead
        Returns : float (a scalar)
        Args    : none

   Other methods
       TFBS::PatterGen::Motif::Gibbs inherits from TFBS::PatternGen::Motif, which inherits from TFBS::Matrix.
       Please consult the documentation of those modules for additional available methods.