bionic (1) ImageSetStatistics.1.gz

NAME

       ImageSetStatistics - part of ANTS registration suite

DESCRIPTION

       Usage:    ImageSetStatistics    ImageDimension    controlslist.txt   outimage.nii   whichstat   {roi.nii}
       {imagelist2forsimilarityweightedstats.txt}

       whichstat = 0:
              median,  1:  max prob appearance  , 2: weighted mean appearance ,  3: trimmed mean , 4 : max value
              ,  option  5 : similarity-weighted (must pass imagelist2 as well) else median , option 6 : same as
              similarity-weighted option 5 but the label corresponds to the image that provides the  best  local
              match  ...  useful  if you want to MRF smooth these indices  , option 7 : similar to 5 but expects
              the max-value to be stored in the ROI image and uses it to get the intensity ...

       example:
              ImageSetStatistics  3   imagelist.txt  maxvalueimage.nii.gz 4

              similarity weighted --- pass in a list of similarity images here which will be used to select  the
              best label --- thus, number of similarity images must match the number of label images .