NAME

       WarpTensorImageMultiTransform - part of ANTS registration suite

DESCRIPTION

       WarpImageMultiTransform     ImageDimension    moving_image    output_image    [-R    reference_image    |
       --tightest-bounding-box]      (--reslice-by-header)      [--use-NN      (use       Nearest       Neighbor
       Interpolator)][--ANTS-prefix  prefix-name  | --ANTS-prefix-invert prefix-name] {[deformation_field | [-i]
       affine_transform_txt | --Id | [-i] --moving-image-header / -mh  | [-i] --reference-image-header  /  -rh]}
       Example:   Reslice   the  image:  WarpImageMultiTransform  3  Imov.nii  Iout.nii  --tightest-bounding-box
       --reslice-by-header Reslice the image to a reference image: WarpImageMultiTransform 3  Imov.nii  Iout.nii
       -R  Iref.nii --tightest-bounding-box --reslice-by-header Note: -i will use the inversion of the following
       affine transform.  --tightest-bounding-box will be overrided by -R reference_image if given. It  computes
       the  tightest  bounding  box  using  all  the  affine transformations.  --Id uses the identity transform.
       --moving-image-header or -mh in short will use the orientation header of the moving image file.  This  is
       typically  not  used  with  --reslice-by-header.   --reference-image-header  or -rh in short will use the
       orientation header of the fixed  image  file.  This  is  typically  not  used  with  --reslice-by-header.
       --reslice-by-header  uses  the  orientation matrix and origin encoded in the image file header. It can be
       used together with -R. This is typically not used together with any other transforms. --reslice-by-header
       is equvalient to -i -mh, or -fh -i -mh if used together with -R.

       For ANTS users: To use with the deformation field and the affine transform  files  generated  from  ANTS:
       --ANTS-prefix  prefix-name  --ANTS-prefix-invert  prefix-name  Example:  3  moving_image  output_image -R
       reference_image                   --ANTS-prefix                    abcd.nii.gz                    Applies
       abcdWarpxvec.nii.gz/abcdWarpyvec.nii.gz/abcdWarpzvec.nii.gz  and  then abcdAffine.txt. Use this with ANTS
       to get the moving_image warped into  the  reference_image  domain.   3  reference_image  output_image  -R
       moving_image  --ANTS-prefix-invert  abcd.nii.gz --ANTS-invert Applies the inversion of abcdAffine.txt and
       then abcdInverseWarpxvec.nii.gz/abcdInverseWarpyvec.nii.gz/abcdInverseWarpzvec.nii.gz. Use this with ANTS
       to get the reference_image warped into the moving_image domain.  Note: prefix  name  "abcd"  without  any
       extension will use ".nii.gz" by default

WarpTensorImageMultiTransform 2.2.0                August 2017                  WARPTENSORIMAGEMULTITRANSFORM(1)