bionic (1) WarpTimeSeriesImageMultiTransform.1.gz

NAME

       WarpTimeSeriesImageMultiTransform - part of ANTS registration suite

DESCRIPTION

       Usage    1    (Forward   warp):   WarpTimeSeriesImageMultiTransform   ImageDimension   <moving_image.ext>
       <output_image.ext> -R <fixed_image.ext> <MyWarp.ext> <MyAffine.txt> [interpolation]

       Usage   2   (Inverse   warp):    WarpTimeSeriesImageMultiTransform    ImageDimension    <fixed_image.ext>
       <output_image.ext> -R <moving_image.ext> -i <MyAffine.txt> <MyInverseWarp.ext> [interpolation]

       Usage Information

       ImageDimension
              : 3 or 4 (required argument).

       <moving_image.ext>
              :  The  image  to  apply  the  transformation to. The moving_image will be either a 3-D image with
              vector voxels or a 4D image with scalar voxels.

       <output_image.ext>
              : The resulting image. Output will be of the same type as input, but  will  be  resampled  to  the
              domain size defined by the -R image.

       <MyWarp.ext> <MyAffine.txt>
              :   Mappings  can  be  stringed  together,  e.g.:  MyAffine.txt  MySecondAffine.txt  MyWarp.nii.gz
              MySecondWarp.nii.gz -i MyInverseAffine.txt

OPTIONS

       -i     : Will use the inversion of the following affine transform.

       -R     : Reference image space that you wish to warp into.

       --reslice-by-header
              : Equivalient to -i -mh, or -fh -i -mh if used together with -R. It uses  the  orientation  matrix
              and origin encoded in the image file header.

       --tightest-bounding-box
              : Computes the tightest bounding box using all the affine transformations. It will be overrided by
              -R <reference_image.ext> if given.

              These options can be used together with -R and are typically not  used  together  with  any  other
              transforms.

   Interpolation:
       --use-NN
              : Use Nearest Neighbor Interpolator

       --use-BSpline
              : Use 3rd order B-Spline Interpolation.