bionic (1) antsApplyTransforms.1.gz

NAME

       antsApplyTransforms - part of ANTS registration suite

DESCRIPTION

   COMMAND:
              antsApplyTransforms

              antsApplyTransforms, applied to an input image, transforms it according to a reference image and a
              transform (or a set of transforms).

   OPTIONS:
       -d, --dimensionality 2/3/4

              This option forces the image to be treated as a specified-dimensional  image.  If  not  specified,
              antsWarp tries to infer the dimensionality from the input image.

       -e, --input-image-type 0/1/2/3
              scalar/vector/tensor/time-series

              Option  specifying  the  input  image  type  of  scalar (default), vector, tensor, or time series.
              <VALUES>: 0

       -i, --input inputFileName

              Currently, the only input objects supported are image  objects.  However,  the  current  framework
              allows for warping of other objects such as meshes and point sets.

       -r, --reference-image imageFileName

              For  warping input images, the reference image defines the spacing, origin, size, and direction of
              the output warped image.

       -o, --output warpedOutputFileName

              [warpedOutputFileName         or         compositeDisplacementField,<printOutCompositeWarpFile=0>]
              Linear[genericAffineTransformFile,<calculateInverse=0>]

              One  can  either  output  the  warped  image  or,  if  the  boolean  is set, one can print out the
              displacement field based on the composite transform and the reference image. A third option is  to
              compose  all affine transforms and (if boolean is set) calculate its inverse which is then written
              to an ITK file

       -n, --interpolation Linear
              NearestNeighbor                                       MultiLabel[<sigma=imageSpacing>,<alpha=4.0>]
              Gaussian[<sigma=imageSpacing>,<alpha=1.0>] BSpline[<order=3>] CosineWindowedSinc WelchWindowedSinc
              HammingWindowedSinc LanczosWindowedSinc GenericLabel[<interpolator=Linear>]

              Several interpolation options are available in ITK. These have all been made available.

       -t, --transform transformFileName
              [transformFileName,useInverse]

              Several transform options are supported including all those defined in the ITK library in addition
              to  a  deformation  field  transform.  The  ordering  of  the transformations follows the ordering
              specified on the command line. An identity transform is pushed onto the transformation stack. Each
              new transform encountered on the command line is also pushed onto the transformation stack.  Then,
              to warp the input object, each point comprising the input object is warped first according to  the
              last transform pushed onto the stack followed by the second to last transform, etc. until the last
              transform encountered which is the identity transform. Also, it should be noted that  the  inverse
              transform  can  be  accommodated with the usual caveat that such an inverse must be defined by the
              specified transform class

       -f, --default-value value

              Default voxel value to be used with input images only. Specifies the voxel value  when  the  input
              point  maps  outside  the  output  domain.  With  tensor input images, specifies the default voxel
              eigenvalues.

       -z, --static-cast-for-R value

              forces static cast in ReadTransform (for R)

       --float

              Use 'float' instead of 'double' for computations.  <VALUES>: 0

       -v, --verbose (0)/1

              Verbose output.

       -h

              Print the help menu (short version).

       --help

              Print the help menu.  <VALUES>: 1