NAME

       antsApplyTransforms - part of ANTS registration suite

DESCRIPTION

   COMMAND:
              antsApplyTransforms

              antsApplyTransforms, applied to an input image, transforms it according to a reference image and a
              transform (or a set of transforms).

   OPTIONS:

       -d, --dimensionality 2/3/4

              This  option  forces  the  image to be treated as a specified-dimensional image. If not specified,
              antsWarp tries to infer the dimensionality from the input image.

       -e, --input-image-type 0/1/2/3
              scalar/vector/tensor/time-series

              Option specifying the input image type of  scalar  (default),  vector,  tensor,  or  time  series.
              <VALUES>: 0

       -i, --input inputFileName

              Currently,  the  only  input  objects  supported are image objects. However, the current framework
              allows for warping of other objects such as meshes and point sets.

       -r, --reference-image imageFileName

              For warping input images, the reference image defines the spacing, origin, size, and direction  of
              the output warped image.

       -o, --output warpedOutputFileName

              [warpedOutputFileName         or         compositeDisplacementField,<printOutCompositeWarpFile=0>]
              Linear[genericAffineTransformFile,<calculateInverse=0>]

              One can either output the warped image  or,  if  the  boolean  is  set,  one  can  print  out  the
              displacement  field based on the composite transform and the reference image. A third option is to
              compose all affine transforms and (if boolean is set) calculate its inverse which is then  written
              to an ITK file

       -n, --interpolation Linear
              NearestNeighbor                                       MultiLabel[<sigma=imageSpacing>,<alpha=4.0>]
              Gaussian[<sigma=imageSpacing>,<alpha=1.0>] BSpline[<order=3>] CosineWindowedSinc WelchWindowedSinc
              HammingWindowedSinc LanczosWindowedSinc GenericLabel[<interpolator=Linear>]

              Several interpolation options are available in ITK. These have all been made available.

       -t, --transform transformFileName
              [transformFileName,useInverse]

              Several transform options are supported including all those defined in the ITK library in addition
              to a deformation field transform.  The  ordering  of  the  transformations  follows  the  ordering
              specified on the command line. An identity transform is pushed onto the transformation stack. Each
              new transform encountered on the command line is also pushed onto the transformation stack.  Then,
              to  warp the input object, each point comprising the input object is warped first according to the
              last transform pushed onto the stack followed by the second to last transform, etc. until the last
              transform encountered which is the identity transform. Also, it should be noted that  the  inverse
              transform  can  be  accommodated with the usual caveat that such an inverse must be defined by the
              specified transform class

       -f, --default-value value

              Default voxel value to be used with input images only. Specifies the voxel value  when  the  input
              point  maps  outside  the  output  domain.  With  tensor input images, specifies the default voxel
              eigenvalues.

       -z, --static-cast-for-R value

              forces static cast in ReadTransform (for R)

       --float

              Use 'float' instead of 'double' for computations.  <VALUES>: 0

       -v, --verbose (0)/1

              Verbose output.

       -h

              Print the help menu (short version).

       --help

              Print the help menu.  <VALUES>: 1

antsApplyTransforms 2.2.0                          August 2017                            ANTSAPPLYTRANSFORMS(1)