Provided by: ruby-bio_1.5.0-2ubuntu1_all 
NAME
br_bioflat.rb — OBDA flat file indexer
SYNOPSIS
Search:
br_bioflat.rb [--search] [options...]
br_bioflat.rb [--search] [--location DIR] [--dbname DBNAME] [options...] [KEYWORDS]
Create index:
br_bioflat.rb [--create] [--location DIR] [--dbname DBNAME] [--format genbank|embl|fasta]
[options...] [--files FILES...]
Update index:
br_bioflat.rb [--update] [--location DIR] [--dbname DBNAME] [options...] [--files FILES...]
Show namespaces:
br_bioflat.rb [--show-namespaces] [--location DIR] [--dbname DBNAME] [DIR/DBNAME]
br_bioflat.rb [--show-namespaces] [--format=CLASS]
br_bioflat.rb [--show-namespaces] [--files file]
DESCRIPTION
This manual page documents briefly the br_bioflat.rb.
br_bioflat.rb is an OBDA flat file indexer.
OPTIONS
--search Search a database for keywords.
--namespace --name
Only valid with the --search option. Set the search namespace. You can set this option
multiple times to specify more than one namespace.
--create Create an index.
--location
Specify the directory.
--dbname Specify the name of the database.
--primary --secondary
Set the primary and secondarynamespace of the index. Default primary/secondary namespaces
depend on the format of the flatfiles. Only valid with the --create option.
--add-secondary
Add secondary namespaces to the default specification. You can use this option many times. Only
valid with the --create option.
--update Update an index
--sort Sort an index. You can set this to a path to an external sorting program, or BUILTIN to use the
builtin sort module. This option is only valid with --create (or --update) and --type flat
options.
--renew Re-read all flatfiles and update whole index. This option is only valid with the --update
option.
--show-namespaces
Display the namespaces for an index file.
AUTHOR
This manual page was written by David Nusinow dnusinow@debian.org for the Debian system (but may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by the Free Software Foundation. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common- licenses/GPL. BIORUBY(1)