bionic (1) cmtk-xform2itk.1.gz

Provided by: cmtk_3.3.1-1.2build1_amd64 bug

NAME

       xform2itk - Convert affine transformations to ITK format.

SYNOPSIS

       xform2itk InputPath OutputPath

DESCRIPTION

       This  tool  converts  coordinate transformations from CMTK format to ITK format and, in the process, also
       correct for differences in image coordinate conventions

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input parameters
       --fixed-space <string>
            Change fixed image coordinate space (e.g., 'RAS', 'LPS', ...). This defaults to ITK standard  space.
            [Default: LPS ]

       --moving-space <string>
            Change moving image coordinate space (e.g., 'RAS', 'LPS', ...). This defaults to ITK standard space.
            [Default: LPS ]

       --invert-input
            Invert input transformation before conversion

   Output parameters
       --fixed-image <string>
            Override transformation's fixed/reference image (if any) with this one.  [Default: NONE]

       --moving-image <string>
            Override transformation's moving/floating image (if any) with this one.  [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.  Maurer,  Daniel  B.
       Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK  is  developed  with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and
       Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through  September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.